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Jscatter 1.6.4
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E
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H
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I
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J
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K
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L
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M
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N
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O
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P
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Q
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R
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T
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V
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W
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Y
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Z
A
aaHydrophobicity (in module jscatter.data)
addColumn() (jscatter.dataarray.dataArray method)
addH_Pymol() (in module jscatter.bio.mda)
Addsubplot() (jscatter.mpl.jsFigure method)
addXMLParameter() (in module jscatter.smallanglescattering)
addZeroColumns() (jscatter.dataarray.dataArray method)
adhesiveHardSphere() (in module jscatter.structurefactor.fluid)
AgBepeaks (in module jscatter.sasimagelib)
AgBeReference() (in module jscatter.smallanglescattering)
all() (jscatter.dataarray.dataArray method)
allatommode() (jscatter.bio.nma.NM method)
alongLine() (jscatter.structurefactor.lattices.lattice method)
alternatingCoPolymer() (in module jscatter.formfactor.polymer)
animate() (jscatter.bio.nma.NM method)
ANMA (class in jscatter.bio.nma)
Annotation (class in jscatter.graceplot)
any() (jscatter.dataarray.dataArray method)
append() (jscatter.dataarray.dataList method)
appendPoints() (jscatter.structurefactor.lattices.pseudoRandomLattice method)
argmax() (jscatter.dataarray.dataArray method)
argmin() (jscatter.dataarray.dataArray method)
argpartition() (jscatter.dataarray.dataArray method)
argsort() (jscatter.dataarray.dataArray method)
array (jscatter.bio.nma.Mode property)
(jscatter.dataarray.dataArray property)
(jscatter.sasimagelib.sasImage property)
(jscatter.sasimagelib.SubArray property)
(jscatter.structurefactor.lattices.lattice property)
Arrow() (jscatter.mpl.jspaperAxes method)
asdataArray() (jscatter.sasimagelib.sasImage method)
asImage() (jscatter.sasimagelib.sasImage method)
aslist (jscatter.dataarray.dataList property)
aspect_scale() (jscatter.graceplot.GracePlot method)
assign() (jscatter.graceplot.createColorTable method)
assign_color() (jscatter.graceplot.GracePlot method)
astype() (jscatter.dataarray.dataArray method)
attr (jscatter.bio.nma.Mode property)
(jscatter.dataarray.dataArray property)
(jscatter.dataarray.dataList property)
(jscatter.sasimagelib.SubArray property)
Autoscale() (jscatter.graceplot.GraceGraph method)
autoscale() (jscatter.graceplot.GraceGraph method)
Autoscale() (jscatter.mpl.jspaperAxes method)
autoscaleYinoverlapX() (in module jscatter.smallanglescattering)
autotick() (jscatter.graceplot.GraceGraph method)
azimuthAverage() (jscatter.sasimagelib.sasImage method)
B
b (jscatter.structurefactor.lattices.lattice property)
b2_incSol (jscatter.bio.mda.scatteringUniverse property)
ball (jscatter.structurefactor.lattices.lattice property)
balpha_m() (jscatter.sasimagelib.PickerDetPosition method)
balpha_p() (jscatter.sasimagelib.PickerDetPosition method)
Bar (class in jscatter.graceplot)
base (jscatter.dataarray.dataArray attribute)
bastep() (jscatter.sasimagelib.PickerDetPosition method)
bbeta_m() (jscatter.sasimagelib.PickerDetPosition method)
bbeta_p() (jscatter.sasimagelib.PickerDetPosition method)
bccLattice (class in jscatter.structurefactor.lattices)
bcDensitySol (jscatter.bio.mda.scatteringUniverse property)
bcenterx_m() (jscatter.sasimagelib.PickerDetPosition method)
bcenterx_p() (jscatter.sasimagelib.PickerDetPosition method)
bcentery_m() (jscatter.sasimagelib.PickerDetPosition method)
bcentery_p() (jscatter.sasimagelib.PickerDetPosition method)
bcstep() (jscatter.sasimagelib.PickerDetPosition method)
bdistance_m() (jscatter.sasimagelib.PickerDetPosition method)
bdistance_p() (jscatter.sasimagelib.PickerDetPosition method)
beaucage() (in module jscatter.formfactor.polymer)
bgamma_m() (jscatter.sasimagelib.PickerDetPosition method)
bgamma_p() (jscatter.sasimagelib.PickerDetPosition method)
bicelleRh() (in module jscatter.formel.physics)
bin (jscatter.formel.imageHash property)
bispline() (jscatter.dataarray.dataList method)
bonded (jscatter.bio.nma.NM property)
boseDistribution() (in module jscatter.formel.functions)
box() (in module jscatter.formel.functions)
boxVolume (jscatter.bio.mda.scatteringUniverse property)
bravaisLattice (class in jscatter.structurefactor.lattices)
breakbottom (jscatter.graceplot.frames attribute)
breakleft (jscatter.graceplot.frames attribute)
breakright (jscatter.graceplot.frames attribute)
breaktop (jscatter.graceplot.frames attribute)
brownianNMdiag (class in jscatter.bio.nma)
bstep() (jscatter.sasimagelib.PickerDetPosition method)
bufferviscosity() (in module jscatter.formel.physics)
byteswap() (jscatter.dataarray.dataArray method)
C
calibrateOffsetDetector() (jscatter.sasimagelib.sasImage method)
centerOfMass() (jscatter.structurefactor.lattices.lattice method)
character (jscatter.graceplot.symbols attribute)
choose() (jscatter.dataarray.dataArray method)
circle (jscatter.graceplot.symbols attribute)
clear() (jscatter.dataarray.dataList method)
Clear() (jscatter.graceplot.GraceGraph method)
clear() (jscatter.graceplot.GraceGraph method)
Clear() (jscatter.graceplot.GracePlot method)
clear() (jscatter.graceplot.GracePlot method)
Clear() (jscatter.mpl.jsFigure method)
(jscatter.mpl.jspaperAxes method)
clip() (jscatter.dataarray.dataArray method)
close() (in module jscatter.mpl)
(jscatter.graceplot.GracePlot method)
Close() (jscatter.mpl.jsFigure method)
closed (jscatter.graceplot.frames attribute)
cloudScattering() (in module jscatter.formfactor.cloudscattering)
columnIndex (jscatter.dataarray.dataArray property)
command_args (jscatter.graceplot.GracePlot attribute)
commonAttr (jscatter.dataarray.dataList property)
compress() (jscatter.dataarray.dataArray method)
concatenate() (jscatter.dataarray.dataArray method)
conj() (jscatter.dataarray.dataArray method)
conjugate() (jscatter.dataarray.dataArray method)
contin() (in module jscatter.dls)
contin_display() (in module jscatter.dls)
contourImage() (in module jscatter.mpl)
contourOnCube() (in module jscatter.mpl)
convolve() (in module jscatter.dynamic.fft)
(in module jscatter.formel.quadrature)
copy() (jscatter.bio.mda.scatteringUniverse method)
(jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
copyattr2elements() (jscatter.dataarray.dataList method)
copyFiles() (in module jscatter.smallanglescattering)
copyUnivProp() (in module jscatter.bio.mda)
count() (jscatter.dataarray.dataList method)
createColorTable (class in jscatter.graceplot)
createImageDescriptions() (in module jscatter.sasimagelib)
createImageFromArray() (in module jscatter.sasimagelib)
createLogPNG() (in module jscatter.sasimagelib)
criticalSystem() (in module jscatter.structurefactor.fluid)
cross (jscatter.graceplot.symbols attribute)
cstar() (in module jscatter.formel.physics)
ctypes (jscatter.dataarray.dataArray attribute)
cuboid() (in module jscatter.formfactor.bodies)
cumprod() (jscatter.dataarray.dataArray method)
cumsum() (jscatter.dataarray.dataArray method)
cumulant() (in module jscatter.dynamic.timedomain)
cumulantDLS() (in module jscatter.dynamic.timedomain)
cylinder() (in module jscatter.formfactor.bodies)
D
d2oFract (jscatter.bio.mda.scatteringUniverse property)
DAB() (in module jscatter.formfactor.polymer)
dashed (jscatter.graceplot.lines attribute)
Data (class in jscatter.graceplot)
data (jscatter.dataarray.dataArray attribute)
dataArray (class in jscatter.dataarray)
DataBar (class in jscatter.graceplot)
dataList (class in jscatter.dataarray)
dataset_type_name (jscatter.graceplot.Data attribute)
(jscatter.graceplot.DataBar attribute)
(jscatter.graceplot.DataXYBoxWhisker attribute)
(jscatter.graceplot.DataXYDX attribute)
(jscatter.graceplot.DataXYDXDX attribute)
(jscatter.graceplot.DataXYDXDXDYDY attribute)
(jscatter.graceplot.DataXYDXDY attribute)
(jscatter.graceplot.DataXYDY attribute)
(jscatter.graceplot.DataXYDYDY attribute)
(jscatter.graceplot.DataXYZ attribute)
DataXYBoxWhisker (class in jscatter.graceplot)
DataXYDX (class in jscatter.graceplot)
DataXYDXDX (class in jscatter.graceplot)
DataXYDXDXDYDY (class in jscatter.graceplot)
DataXYDXDY (class in jscatter.graceplot)
DataXYDY (class in jscatter.graceplot)
DataXYDYDY (class in jscatter.graceplot)
DataXYZ (class in jscatter.graceplot)
delete() (jscatter.dataarray.dataList method)
desmear() (in module jscatter.smallanglescattering)
detachErrPlot() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
diagonal() (jscatter.dataarray.dataArray method)
diamond (jscatter.graceplot.symbols attribute)
diamondLattice (class in jscatter.structurefactor.lattices)
dielectricConstant() (in module jscatter.formel.physics)
diffuseLamellarStack() (in module jscatter.structurefactor.ordered)
diffusionHarmonicPotential() (in module jscatter.dynamic.timedomain)
diffusionHarmonicPotential_w() (in module jscatter.dynamic.frequencydomain)
diffusionInSphere_w() (in module jscatter.dynamic.frequencydomain)
diffusionPeriodicPotential() (in module jscatter.dynamic.timedomain)
diffusionTRUnivTensor() (in module jscatter.bio.scatter)
diffusionTRUnivYlm() (in module jscatter.bio.scatter)
disc() (in module jscatter.formfactor.bodies)
Disconnected
displacement() (jscatter.bio.nma.NM method)
dlattr() (jscatter.dataarray.dataList method)
doForList() (in module jscatter.parallel)
dot() (jscatter.dataarray.dataArray method)
dot_dashed (jscatter.graceplot.lines attribute)
dotted (jscatter.graceplot.lines attribute)
doubleDiffusion() (in module jscatter.dynamic.timedomain)
dropDecoratedCoreShell() (in module jscatter.formfactor.composed)
Drot() (in module jscatter.formel.physics)
DrotfromT12() (in module jscatter.formel.physics)
Dtrans() (in module jscatter.formel.physics)
dtype (jscatter.dataarray.dataArray attribute)
(jscatter.dataarray.dataList property)
dump() (jscatter.dataarray.dataArray method)
dumps() (jscatter.dataarray.dataArray method)
dynamicSusceptibility() (in module jscatter.dynamic.fft)
E
Ea() (in module jscatter.formel.functions)
edensitySol (jscatter.bio.mda.scatteringUniverse property)
eF() (jscatter.bio.nma.brownianNMdiag method)
eFC() (jscatter.bio.nma.ANMA method)
(jscatter.bio.nma.brownianNMdiag method)
(jscatter.bio.nma.vibNM method)
effectiveForceConstant() (jscatter.bio.nma.ANMA method)
(jscatter.bio.nma.brownianNMdiag method)
(jscatter.bio.nma.vibNM method)
effectiveFriction() (jscatter.bio.nma.brownianNMdiag method)
effectiveMass() (jscatter.bio.nma.vibNM method)
eigenvalue (jscatter.bio.nma.Mode property)
eijk (in module jscatter.formel.functions)
elastic_w() (in module jscatter.dynamic.frequencydomain)
Elements (in module jscatter.data)
ellipsoid() (in module jscatter.formfactor.bodies)
ellipsoidFilledCylinder() (in module jscatter.formfactor.composed)
eM() (jscatter.bio.nma.vibNM method)
Errorbar (class in jscatter.graceplot)
errplot (jscatter.dataarray.dataArray property)
(jscatter.dataarray.dataList property)
errPlot() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
errPlotTitle() (jscatter.dataarray.dataArray method)
errPlottitle() (jscatter.dataarray.dataArray method)
errPlotTitle() (jscatter.dataarray.dataList method)
estimateError() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
etree_to_dict() (in module jscatter.sasimagelib)
Exit() (jscatter.graceplot.GracePlot method)
exit() (jscatter.graceplot.GracePlot method)
Exit() (jscatter.mpl.jsFigure method)
explicitNM (class in jscatter.bio.nma)
extend() (jscatter.dataarray.dataList method)
extract_comm() (jscatter.dataarray.dataArray method)
extractAttribut() (jscatter.dataarray.dataList method)
extrapolate() (jscatter.dataarray.dataList method)
eY (jscatter.dataarray.dataArray property)
F
fa_cuboid() (in module jscatter.formfactor.cloudscattering)
fa_disc() (in module jscatter.formfactor.cloudscattering)
fa_ellipsoid() (in module jscatter.formfactor.cloudscattering)
fastpdb2pqr() (in module jscatter.bio.mda)
fccLattice (class in jscatter.structurefactor.lattices)
felectron (in module jscatter.data)
fetch_pdb() (in module jscatter.bio.mda)
fibonacciLatticePointsOnSphere() (in module jscatter.parallel)
figure() (in module jscatter.mpl)
fill() (jscatter.dataarray.dataArray method)
fills (class in jscatter.graceplot)
filter() (jscatter.dataarray.dataList method)
(jscatter.structurefactor.lattices.lattice method)
findCenterOfIntensity() (jscatter.sasimagelib.sasImage method)
finiteRouse() (in module jscatter.dynamic.timedomain)
finiteZimm() (in module jscatter.dynamic.timedomain)
fit() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
fixedFiniteRouse() (in module jscatter.dynamic.timedomain)
fixedFiniteZimm() (in module jscatter.dynamic.timedomain)
fjc() (in module jscatter.structurefactor.fluid)
flags (jscatter.dataarray.dataArray attribute)
flat (jscatter.dataarray.dataArray attribute)
flatten() (jscatter.dataarray.dataArray method)
focus() (jscatter.graceplot.GracePlot method)
forceConstant() (jscatter.bio.nma.ANMA method)
fractal() (in module jscatter.structurefactor.fluid)
frame() (jscatter.graceplot.GraceGraph method)
frames (class in jscatter.graceplot)
frequency() (jscatter.bio.nma.ANMA method)
(jscatter.bio.nma.brownianNMdiag method)
(jscatter.bio.nma.vibNM method)
fromFunction() (jscatter.dataarray method)
fuzzyCylinder() (in module jscatter.formfactor.composed)
G
gauss() (in module jscatter.formel.functions)
gaussianChain() (in module jscatter.formfactor.polymer)
gaussianFilter() (jscatter.sasimagelib.sasImage method)
gen_axis() (jscatter.graceplot.GraceGraph method)
genGuinier() (in module jscatter.formfactor.polymer)
getBayesSampler() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
getBeamWidth() (in module jscatter.smallanglescattering)
getChi2Trace() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
getDistanceMatrix() (in module jscatter.bio.mda)
getfield() (jscatter.dataarray.dataArray method)
getfromcomment() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
(jscatter.sasimagelib.sasImage method)
getHWHM() (in module jscatter.dynamic.fft)
getNativeContacts() (in module jscatter.bio.mda)
getPolar() (jscatter.sasimagelib.sasImage method)
getRadialReciprocalLattice() (jscatter.structurefactor.lattices.rhombicLattice method)
getReciprocalLattice() (jscatter.structurefactor.lattices.rhombicLattice method)
getScatteringAngle() (jscatter.structurefactor.lattices.rhombicLattice method)
getSurfaceVolumePoints() (in module jscatter.bio.mda)
gf (in module jscatter.mpl)
grace() (jscatter.graceplot.GraceGraph method)
grace_command (jscatter.graceplot.GracePlot attribute)
GraceGraph (class in jscatter.graceplot)
GracePlot (class in jscatter.graceplot)
guess_bonds() (jscatter.bio.mda.scatteringUniverse method)
guinier() (in module jscatter.formfactor.polymer)
guinierPorod() (in module jscatter.formfactor.polymer)
guinierPorod3d() (in module jscatter.formfactor.polymer)
H
h (in module jscatter.dynamic.fft)
halfopen (jscatter.graceplot.frames attribute)
haltonSequence() (in module jscatter.parallel)
has_limit (jscatter.dataarray.dataArray property)
(jscatter.dataarray.dataList property)
hasConstrain (jscatter.dataarray.dataArray property)
(jscatter.dataarray.dataList property)
hasLimit (jscatter.dataarray.dataArray property)
(jscatter.dataarray.dataList property)
hbar (in module jscatter.dynamic.fft)
hcpLattice (class in jscatter.structurefactor.lattices)
headless (jscatter.graceplot.GracePlot attribute)
hex (jscatter.formel.imageHash property)
hex2DLattice (class in jscatter.structurefactor.lattices)
hexLattice (class in jscatter.structurefactor.lattices)
hold() (jscatter.graceplot.GraceGraph method)
(jscatter.graceplot.GracePlot method)
honeycombLattice (class in jscatter.structurefactor.lattices)
hullRad() (in module jscatter.libs.HullRad)
hydrodynamicFunct() (in module jscatter.structurefactor.fluid)
I
idealHelix() (in module jscatter.formfactor.composed)
imag (jscatter.dataarray.dataArray attribute)
imageHash (class in jscatter.formel)
inCylinder() (jscatter.structurefactor.lattices.lattice method)
index() (jscatter.dataarray.dataList method)
inEllipsoid() (jscatter.structurefactor.lattices.lattice method)
inheritDocstringFrom() (in module jscatter.graceplot)
inhomogeneousCylinder() (in module jscatter.formfactor.composed)
inhomogeneousSphere() (in module jscatter.formfactor.composed)
inParallelepiped() (jscatter.structurefactor.lattices.lattice method)
insert() (jscatter.dataarray.dataList method)
inSphere() (jscatter.structurefactor.lattices.lattice method)
int (jscatter.formel.imageHash property)
integralZimm() (in module jscatter.dynamic.timedomain)
interp() (jscatter.dataarray.dataArray method)
interpAll() (jscatter.dataarray.dataArray method)
interpolate() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
interpolateMaskedRadial() (jscatter.sasimagelib.sasImage method)
intScatFuncOU() (in module jscatter.bio.scatter)
intScatFuncPMode() (in module jscatter.bio.scatter)
intScatFuncYlm() (in module jscatter.bio.scatter)
invRelaxTime() (jscatter.bio.nma.brownianNMdiag method)
iRT() (jscatter.bio.nma.brownianNMdiag method)
is_open() (jscatter.graceplot.GracePlot method)
(jscatter.mpl.jsFigure method)
is_terminal() (in module jscatter.mpl)
isort() (jscatter.dataarray.dataArray method)
item() (jscatter.dataarray.dataArray method)
itemset() (jscatter.dataarray.dataArray method)
itemsize (jscatter.dataarray.dataArray attribute)
iX (jscatter.sasimagelib.sasImage property)
iY (jscatter.sasimagelib.sasImage property)
J
jscatter
module
jscatter.bio
module
jscatter.bio.mda
module
jscatter.bio.scatter
module
jscatter.data
module
jscatter.dls
module
,
[1]
jscatter.dynamic.fft
module
jscatter.dynamic.frequencydomain
module
jscatter.dynamic.timedomain
module
jscatter.examples
module
jscatter.formel.formel
module
jscatter.formel.functions
module
jscatter.formel.physics
module
jscatter.formel.quadrature
module
jscatter.formfactor.bodies
module
jscatter.formfactor.cloudscattering
module
jscatter.formfactor.composed
module
jscatter.formfactor.polymer
module
jscatter.graceplot
module
jscatter.mpl
module
jscatter.parallel
module
jscatter.sasimagelib
module
,
[1]
jscatter.smallanglescattering
module
jscatter.structurefactor.fluid
module
jscatter.structurefactor.lattices
module
jscatter.structurefactor.ordered
module
jsFigure (class in jscatter.mpl)
jspaperAxes (class in jscatter.mpl)
jumpDiff_w() (in module jscatter.dynamic.frequencydomain)
jumpDiffusion() (in module jscatter.dynamic.timedomain)
K
kill() (jscatter.graceplot.GraceGraph method)
killErrPlot() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
kTdisplacement() (jscatter.bio.nma.explicitNM method)
(jscatter.bio.nma.NM method)
kTdisplacementNM() (jscatter.bio.nma.NM method)
kTrmsd() (jscatter.bio.nma.NM method)
kTrmsdNM() (jscatter.bio.nma.NM method)
L
Label (class in jscatter.graceplot)
lamLattice (class in jscatter.structurefactor.lattices)
lastSelection (jscatter.structurefactor.lattices.lattice property)
lattice (class in jscatter.structurefactor.lattices)
latticeFromCIF (class in jscatter.structurefactor.lattices)
,
[1]
latticeFromMDA (class in jscatter.structurefactor.lattices)
,
[1]
latticeStructureFactor() (in module jscatter.structurefactor.ordered)
latticeVectorsFromLatticeConstants() (in module jscatter.structurefactor.lattices)
Legend() (jscatter.graceplot.GraceGraph method)
legend() (jscatter.graceplot.GraceGraph method)
(jscatter.graceplot.GracePlot method)
Legend() (jscatter.mpl.jsFigure method)
(jscatter.mpl.jspaperAxes method)
len (jscatter.graceplot.createColorTable property)
Line (class in jscatter.graceplot)
line() (jscatter.graceplot.GraceGraph method)
Line() (jscatter.mpl.jsFigure method)
linearPearls() (in module jscatter.formfactor.composed)
lineAverage() (jscatter.sasimagelib.sasImage method)
lineFindCenter() (jscatter.sasimagelib.sasImage method)
lines (class in jscatter.graceplot)
linlog() (jscatter.mpl.jspaperAxes method)
list (jscatter.graceplot.createColorTable property)
load_parameter_file() (jscatter.graceplot.GracePlot method)
locateFiles() (in module jscatter.smallanglescattering)
loglin() (jscatter.mpl.jspaperAxes method)
loglist() (in module jscatter.formel.formel)
lognorm() (in module jscatter.formel.functions)
long_dashed (jscatter.graceplot.lines attribute)
lorentz() (in module jscatter.formel.functions)
M
makeErrPlot() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
makeNewErrPlot() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
mask4Polygon() (jscatter.sasimagelib.sasImage method)
maskbelowLine() (jscatter.sasimagelib.sasImage method)
maskCircle() (jscatter.sasimagelib.sasImage method)
maskFromImage() (jscatter.sasimagelib.sasImage method)
maskRegion() (jscatter.sasimagelib.sasImage method)
maskRegions() (jscatter.sasimagelib.sasImage method)
maskReset() (jscatter.sasimagelib.sasImage method)
maskSectors() (jscatter.sasimagelib.sasImage method)
maskTriangle() (jscatter.sasimagelib.sasImage method)
max() (jscatter.dataarray.dataArray method)
mean() (jscatter.dataarray.dataArray method)
memoize() (in module jscatter.formel.formel)
merge() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
mergeAttribut() (jscatter.dataarray.dataList method)
mergePDBModel() (in module jscatter.bio.mda)
methylRotation() (in module jscatter.dynamic.timedomain)
min() (jscatter.dataarray.dataArray method)
Mode (class in jscatter.bio.nma)
modelValues() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
module
jscatter
jscatter.bio
jscatter.bio.mda
jscatter.bio.scatter
jscatter.data
jscatter.dls
,
[1]
jscatter.dynamic.fft
jscatter.dynamic.frequencydomain
jscatter.dynamic.timedomain
jscatter.examples
jscatter.formel.formel
jscatter.formel.functions
jscatter.formel.physics
jscatter.formel.quadrature
jscatter.formfactor.bodies
jscatter.formfactor.cloudscattering
jscatter.formfactor.composed
jscatter.formfactor.polymer
jscatter.graceplot
jscatter.mpl
jscatter.parallel
jscatter.sasimagelib
,
[1]
jscatter.smallanglescattering
jscatter.structurefactor.fluid
jscatter.structurefactor.lattices
jscatter.structurefactor.ordered
molarity() (in module jscatter.formel.physics)
move() (jscatter.structurefactor.lattices.lattice method)
moveSAXSPACE() (in module jscatter.smallanglescattering)
mplot() (in module jscatter.mpl)
Multi() (jscatter.graceplot.GracePlot method)
multi() (jscatter.graceplot.GracePlot method)
Multi() (jscatter.mpl.jsFigure method)
multilamellarVesicles() (in module jscatter.formfactor.composed)
multilayer() (in module jscatter.formfactor.composed)
multiParDistributedAverage() (in module jscatter.formel.quadrature)
multiShellCylinder() (in module jscatter.formfactor.composed)
multiShellDisc() (in module jscatter.formfactor.composed)
multiShellEllipsoid() (in module jscatter.formfactor.composed)
multiShellSphere() (in module jscatter.formfactor.composed)
N
nakedCopy() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
name (jscatter.dataarray.dataArray property)
(jscatter.mpl.jspaperAxes attribute)
names (jscatter.dataarray.dataList property)
(jscatter.graceplot.createColorTable property)
nbytes (jscatter.dataarray.dataArray attribute)
ndim (jscatter.dataarray.dataArray attribute)
new_graph() (jscatter.graceplot.GracePlot method)
newbyteorder() (jscatter.dataarray.dataArray method)
NM (class in jscatter.bio.nma)
non_bonded (jscatter.bio.nma.NM property)
none (jscatter.graceplot.fills attribute)
(jscatter.graceplot.lines attribute)
(jscatter.graceplot.symbols attribute)
nonzero() (jscatter.dataarray.dataArray method)
nonzerob (jscatter.structurefactor.lattices.lattice property)
norm (jscatter.bio.nma.Mode property)
nscatIntUniv() (in module jscatter.bio.scatter)
Nscatlength (in module jscatter.data)
nSiteJumpDiffusion_w() (in module jscatter.dynamic.frequencydomain)
numberOfAtoms() (jscatter.structurefactor.lattices.lattice method)
numDensitySol (jscatter.bio.mda.scatteringUniverse property)
O
occupiedVolume() (in module jscatter.bio.mda)
on_button_press() (jscatter.sasimagelib.PickerBeamCenter method)
(jscatter.sasimagelib.PickerDetPosition method)
on_keypress() (jscatter.sasimagelib.PickerBeamCenter method)
on_off() (in module jscatter.graceplot)
on_scroll() (jscatter.sasimagelib.PickerBeamCenter method)
ones() (jscatter.dataarray method)
opaque (jscatter.graceplot.fills attribute)
orientedCloudScattering() (in module jscatter.formfactor.cloudscattering)
orientedCloudScattering3Dff() (in module jscatter.formfactor.cloudscattering)
orientedLatticeStructureFactor() (in module jscatter.structurefactor.ordered)
ornsteinZernike() (in module jscatter.formfactor.polymer)
output() (jscatter.graceplot.Annotation method)
(jscatter.graceplot.Bar method)
(jscatter.graceplot.Data method)
(jscatter.graceplot.Errorbar method)
(jscatter.graceplot.Label method)
(jscatter.graceplot.Line method)
(jscatter.graceplot.Symbol method)
(jscatter.graceplot.Tick method)
(jscatter.graceplot.TickLabel method)
output_differences() (jscatter.graceplot.Data method)
P
parAdaptiveCubature() (in module jscatter.formel.quadrature)
parDistributedAverage() (in module jscatter.formel.quadrature)
parQuadratureAdaptiveClenshawCurtis() (in module jscatter.formel.quadrature)
parQuadratureAdaptiveGauss() (in module jscatter.formel.quadrature)
parQuadratureFixedGauss() (in module jscatter.formel.quadrature)
parQuadratureFixedGaussxD() (in module jscatter.formel.quadrature)
parQuadratureSimpson() (in module jscatter.formel.quadrature)
parseXML() (in module jscatter.sasimagelib)
partition() (jscatter.dataarray.dataArray method)
pdb2pqr() (in module jscatter.bio.mda)
pearlNecklace() (in module jscatter.formfactor.composed)
PercusYevick() (in module jscatter.structurefactor.fluid)
PercusYevick1D() (in module jscatter.structurefactor.fluid)
PercusYevick2D() (in module jscatter.structurefactor.fluid)
perrinFrictionFactor() (in module jscatter.formel.physics)
phase() (in module jscatter.sasimagelib)
pickBeamcenter() (jscatter.sasimagelib.sasImage method)
PickerBeamCenter (class in jscatter.sasimagelib)
PickerDetPosition (class in jscatter.sasimagelib)
planeSide() (jscatter.structurefactor.lattices.lattice method)
Plot() (jscatter.graceplot.GraceGraph method)
plot() (jscatter.graceplot.GraceGraph method)
(jscatter.graceplot.GracePlot method)
Plot() (jscatter.mpl.jsFigure method)
plot() (jscatter.mpl.jsFigure method)
Plot() (jscatter.mpl.jspaperAxes method)
plot() (jscatter.mpl.jspaperAxes method)
plot2Dimage() (in module jscatter.mpl)
plotBeamProfile() (in module jscatter.smallanglescattering)
plus (jscatter.graceplot.symbols attribute)
points (jscatter.structurefactor.lattices.lattice property)
polyfit() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
polygon() (in module jscatter.formfactor.composed)
polymerCorLength() (in module jscatter.formfactor.polymer)
pop() (jscatter.dataarray.dataList method)
powerLaw() (in module jscatter.formfactor.polymer)
pQ (jscatter.sasimagelib.sasImage property)
pQaxes() (jscatter.sasimagelib.sasImage method)
pQnorm (jscatter.sasimagelib.sasImage property)
prepareBeamProfile() (in module jscatter.smallanglescattering)
prepScatGroups() (in module jscatter.bio.scatter)
prism() (in module jscatter.formfactor.bodies)
prod() (jscatter.dataarray.dataArray method)
protectedNames (in module jscatter.dataarray)
prune() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
(jscatter.structurefactor.lattices.lattice method)
pseudoRandomLattice (class in jscatter.structurefactor.lattices)
ptp() (jscatter.dataarray.dataArray method)
put() (jscatter.dataarray.dataArray method)
Q
qEwaldSphere() (in module jscatter.formel.formel)
qlist (jscatter.bio.mda.scatteringUniverse property)
R
radial3DLSF() (in module jscatter.structurefactor.ordered)
radialAverage() (jscatter.sasimagelib.sasImage method)
radialorientedLSF() (in module jscatter.structurefactor.ordered)
radiusBohr (in module jscatter.data)
raftDecoratedCoreShell() (in module jscatter.formfactor.composed)
randomLattice (class in jscatter.structurefactor.lattices)
randomPointsInCube() (in module jscatter.parallel)
randomPointsOnSphere() (in module jscatter.parallel)
ravel() (jscatter.dataarray.dataArray method)
raw (jscatter.bio.nma.Mode property)
raw() (jscatter.bio.nma.explicitNM method)
(jscatter.bio.nma.NM method)
readHydroproResult() (in module jscatter.bio.utilities)
readImages() (in module jscatter.sasimagelib)
readpdh() (in module jscatter.smallanglescattering)
readZetasizerNano() (in module jscatter.dls)
real (jscatter.dataarray.dataArray attribute)
recalibrateDetDistance() (jscatter.sasimagelib.sasImage method)
redraw() (jscatter.graceplot.GraceGraph method)
(jscatter.graceplot.GracePlot method)
reduceSize() (jscatter.sasimagelib.sasImage method)
refineFit() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
regrid() (in module jscatter.mpl)
(jscatter.dataarray.dataArray method)
remove() (jscatter.dataarray.dataList method)
removeSpikes() (in module jscatter.smallanglescattering)
removeSpikesMinmaxMethod() (in module jscatter.smallanglescattering)
repeat() (jscatter.dataarray.dataArray method)
resetlast() (jscatter.graceplot.GraceGraph method)
(jscatter.graceplot.GracePlot method)
Resetlast() (jscatter.mpl.jspaperAxes method)
resFunct() (in module jscatter.smallanglescattering)
resFunctExplicit() (in module jscatter.smallanglescattering)
reshape() (jscatter.dataarray.dataArray method)
resize() (jscatter.dataarray.dataArray method)
(jscatter.graceplot.GracePlot method)
resolution (jscatter.graceplot.GracePlot attribute)
resolution() (in module jscatter.dynamic.timedomain)
resolution_w() (in module jscatter.dynamic.frequencydomain)
resumeAttrTxt() (jscatter.dataarray.dataArray method)
reverse() (jscatter.dataarray.dataList method)
rhombicLattice (class in jscatter.structurefactor.lattices)
ringPolymer() (in module jscatter.formfactor.polymer)
RMSA() (in module jscatter.structurefactor.fluid)
rmsd (jscatter.bio.nma.Mode property)
rmsd() (jscatter.bio.nma.NM method)
rotate() (jscatter.structurefactor.lattices.lattice method)
rotateAroundhkl() (jscatter.structurefactor.lattices.rhombicLattice method)
rotatebyMatrix() (jscatter.structurefactor.lattices.rhombicLattice method)
rotatehkl2Vector() (jscatter.structurefactor.lattices.rhombicLattice method)
rotatePlane2hkl() (jscatter.structurefactor.lattices.rhombicLattice method)
rotatePlaneAroundhkl() (jscatter.structurefactor.lattices.rhombicLattice method)
rotationMatrix() (in module jscatter.formel.formel)
rotDiffusion_w() (in module jscatter.dynamic.frequencydomain)
round() (jscatter.dataarray.dataArray method)
rphitheta2xyz() (in module jscatter.formel.formel)
runAll() (in module jscatter.examples)
runExample() (in module jscatter.examples)
runHydropro() (in module jscatter.bio.utilities)
S
sasImage (class in jscatter.sasimagelib)
save() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
Save() (jscatter.graceplot.GracePlot method)
save() (jscatter.graceplot.GracePlot method)
Save() (jscatter.mpl.jsFigure method)
saveAsTIF() (jscatter.sasimagelib.sasImage method)
savelastErrPlot() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
savetext() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
savetxt() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
scatIntUniv() (in module jscatter.bio.scatter)
scatIntUnivYlm() (in module jscatter.bio.scatter)
scatter3d() (in module jscatter.mpl)
scatteringFromSizeDistribution() (in module jscatter.formel.quadrature)
scatteringLengthDensityCalc() (in module jscatter.formel.physics)
scatteringUniverse (class in jscatter.bio.mda)
schulzDistribution() (in module jscatter.formel.functions)
sCI() (jscatter.dataarray.dataList method)
scLattice (class in jscatter.structurefactor.lattices)
searchsorted() (jscatter.dataarray.dataArray method)
sedimentationCoefficient() (in module jscatter.formel.physics)
sedimentationProfile() (in module jscatter.formel.physics)
sedimentationProfileFaxen() (in module jscatter.formel.physics)
send_commands() (jscatter.graceplot.GracePlot method)
set() (jscatter.mpl.jsFigure method)
(jscatter.mpl.jspaperAxes method)
set_b() (jscatter.structurefactor.lattices.lattice method)
set_bsel() (jscatter.structurefactor.lattices.lattice method)
setattr() (jscatter.bio.nma.Mode method)
(jscatter.dataarray.dataArray method)
(jscatter.sasimagelib.SubArray method)
setAttrFromImage() (jscatter.sasimagelib.sasImage method)
setColumnIndex() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
setConstrain() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
setDetectorDistance() (jscatter.sasimagelib.sasImage method)
setDetectorPosition() (jscatter.sasimagelib.sasImage method)
setfield() (jscatter.dataarray.dataArray method)
setflags() (jscatter.dataarray.dataArray method)
setLimit() (jscatter.dataarray.dataArray method)
setlimit() (jscatter.dataarray.dataArray method)
setLimit() (jscatter.dataarray.dataList method)
setlimit() (jscatter.dataarray.dataList method)
setPixelSize() (jscatter.sasimagelib.sasImage method)
setPlaneCenter() (jscatter.sasimagelib.sasImage method)
setPlaneOrientation() (jscatter.sasimagelib.sasImage method)
setSolvent() (jscatter.bio.mda.scatteringUniverse method)
SetView() (jscatter.graceplot.GraceGraph method)
(jscatter.graceplot.GracePlot method)
(jscatter.mpl.jspaperAxes method)
setWavelength() (jscatter.sasimagelib.sasImage method)
shape (jscatter.dataarray.dataArray attribute)
(jscatter.dataarray.dataList property)
(jscatter.formel.imageHash property)
(jscatter.structurefactor.lattices.lattice property)
shapeall (jscatter.structurefactor.lattices.lattice property)
shared_close() (in module jscatter.parallel)
shared_create() (in module jscatter.parallel)
shared_recover() (in module jscatter.parallel)
shiftAndBinning() (in module jscatter.dynamic.fft)
shiftbyfactor() (jscatter.graceplot.GraceGraph method)
(jscatter.graceplot.GracePlot method)
shortprint() (in module jscatter.sasimagelib)
show() (in module jscatter.mpl)
Show() (jscatter.mpl.jsFigure method)
show() (jscatter.mpl.jsFigure method)
(jscatter.sasimagelib.sasImage method)
(jscatter.structurefactor.lattices.lattice method)
showattr() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
(jscatter.sasimagelib.SubArray method)
showColors() (in module jscatter.mpl)
showExample() (in module jscatter.examples)
showExampleList() (in module jscatter.examples)
showlastErrPlot() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
showlastErrPlot2D() (in module jscatter.mpl)
showPolar() (jscatter.sasimagelib.sasImage method)
sImemoize() (in module jscatter.sasimagelib)
similarity() (jscatter.formel.imageHash method)
simpleDiffusion() (in module jscatter.dynamic.timedomain)
simpleQuadratureSimpson() (in module jscatter.formel.quadrature)
simulate() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
size (jscatter.dataarray.dataArray attribute)
(jscatter.formel.imageHash property)
smear() (in module jscatter.smallanglescattering)
smooth() (in module jscatter.formel.formel)
solid (jscatter.graceplot.fills attribute)
(jscatter.graceplot.lines attribute)
sort() (jscatter.dataarray.dataArray method)
(jscatter.dataarray.dataList method)
sphere() (in module jscatter.formfactor.bodies)
sphereAverage() (in module jscatter.parallel)
sphereCoreShell() (in module jscatter.formfactor.composed)
sphereCoreShellGaussianCorona() (in module jscatter.formfactor.composed)
sphereFuzzySurface() (in module jscatter.formfactor.composed)
sphereGaussianCorona() (in module jscatter.formfactor.composed)
sq2gr() (in module jscatter.structurefactor.fluid)
sqLattice (class in jscatter.structurefactor.lattices)
square (jscatter.graceplot.symbols attribute)
squeeze() (jscatter.dataarray.dataArray method)
stacked() (jscatter.graceplot.GracePlot method)
star (jscatter.graceplot.symbols attribute)
std() (jscatter.dataarray.dataArray method)
stickyHardSphere() (in module jscatter.structurefactor.fluid)
stretchedExp() (in module jscatter.dynamic.timedomain)
strides (jscatter.dataarray.dataArray attribute)
SubArray (class in jscatter.sasimagelib)
subarray (in module jscatter.sasimagelib)
Subtitle() (jscatter.graceplot.GraceGraph method)
subtitle() (jscatter.graceplot.GraceGraph method)
(jscatter.graceplot.GracePlot method)
Subtitle() (jscatter.mpl.jsFigure method)
(jscatter.mpl.jspaperAxes method)
sum() (jscatter.dataarray.dataArray method)
superball() (in module jscatter.formfactor.bodies)
surface() (in module jscatter.mpl)
swapaxes() (jscatter.dataarray.dataArray method)
Symbol (class in jscatter.graceplot)
symbols (class in jscatter.graceplot)
T
T (jscatter.dataarray.dataArray attribute)
T1overT2() (in module jscatter.formel.physics)
take() (jscatter.dataarray.dataArray method)
test() (in module jscatter.graceplot)
(in module jscatter.mpl)
teubnerStrey() (in module jscatter.formfactor.composed)
text() (jscatter.graceplot.GraceGraph method)
(jscatter.graceplot.GracePlot method)
Text() (jscatter.mpl.jsFigure method)
(jscatter.mpl.jspaperAxes method)
Tick (class in jscatter.graceplot)
TickLabel (class in jscatter.graceplot)
time2frequencyFF() (in module jscatter.dynamic.fft)
Title() (jscatter.graceplot.GraceGraph method)
title() (jscatter.graceplot.GraceGraph method)
(jscatter.graceplot.GracePlot method)
Title() (jscatter.mpl.jsFigure method)
(jscatter.mpl.jspaperAxes method)
tobytes() (jscatter.dataarray.dataArray method)
tofile() (jscatter.dataarray.dataArray method)
tolist() (jscatter.dataarray.dataArray method)
tostring() (jscatter.dataarray.dataArray method)
trace() (jscatter.dataarray.dataArray method)
transDiff_w() (in module jscatter.dynamic.frequencydomain)
transmissionCorrection() (in module jscatter.smallanglescattering)
transpose() (jscatter.dataarray.dataArray method)
transposeAttribute() (jscatter.dataarray.dataList method)
transRotDiffusion() (in module jscatter.dynamic.timedomain)
triangle_down (jscatter.graceplot.symbols attribute)
triangle_left (jscatter.graceplot.symbols attribute)
triangle_right (jscatter.graceplot.symbols attribute)
triangle_up (jscatter.graceplot.symbols attribute)
triaxialEllipsoid() (in module jscatter.formfactor.bodies)
twoYukawa() (in module jscatter.structurefactor.fluid)
type (jscatter.structurefactor.lattices.lattice property)
U
unitCellAtomPositions (jscatter.structurefactor.lattices.rhombicLattice property)
update() (jscatter.sasimagelib.PickerBeamCenter method)
(jscatter.sasimagelib.PickerDetPosition method)
update_data() (jscatter.graceplot.GraceGraph method)
updateall() (jscatter.graceplot.GracePlot method)
V
var() (jscatter.dataarray.dataArray method)
vdwradii (in module jscatter.data)
vectorhkl() (jscatter.structurefactor.lattices.rhombicLattice method)
vibNM (class in jscatter.bio.nma)
view() (jscatter.bio.mda.scatteringUniverse method)
(jscatter.dataarray.dataArray method)
viscosity() (in module jscatter.formel.physics)
voigt() (in module jscatter.formel.functions)
W
watercompressibility() (in module jscatter.formel.physics)
waterdensity() (in module jscatter.formel.physics)
waterXrayScattering() (in module jscatter.smallanglescattering)
weakPolyelectrolyte() (in module jscatter.structurefactor.fluid)
weight (jscatter.bio.nma.Mode property)
where() (jscatter.dataarray.dataArray method)
whoHasAttributes (jscatter.dataarray.dataList property)
wormlikeChain() (in module jscatter.formfactor.polymer)
write() (jscatter.graceplot.GracePlot method)
X
X (jscatter.dataarray.dataArray property)
(jscatter.structurefactor.lattices.lattice property)
x_format_string (jscatter.graceplot.Data attribute)
Xall (jscatter.structurefactor.lattices.lattice property)
Xaxis() (jscatter.graceplot.GraceGraph method)
xaxis() (jscatter.graceplot.GraceGraph method)
(jscatter.graceplot.GracePlot method)
Xaxis() (jscatter.mpl.jsFigure method)
(jscatter.mpl.jspaperAxes method)
xlabel() (jscatter.graceplot.GraceGraph method)
(jscatter.graceplot.GracePlot method)
xlimit() (jscatter.graceplot.GraceGraph method)
(jscatter.graceplot.GracePlot method)
xrayFFatomic (in module jscatter.data)
xscatIntUniv() (in module jscatter.bio.scatter)
xsldSol (jscatter.bio.mda.scatteringUniverse property)
XYZ (jscatter.structurefactor.lattices.lattice property)
xyz2rphitheta() (in module jscatter.formel.formel)
XYZall (jscatter.structurefactor.lattices.lattice property)
Y
Y (jscatter.dataarray.dataArray property)
(jscatter.structurefactor.lattices.lattice property)
y_format_string (jscatter.graceplot.Data attribute)
Yall (jscatter.structurefactor.lattices.lattice property)
Yaxis() (jscatter.graceplot.GraceGraph method)
yaxis() (jscatter.graceplot.GraceGraph method)
(jscatter.graceplot.GracePlot method)
Yaxis() (jscatter.mpl.jsFigure method)
(jscatter.mpl.jspaperAxes method)
ylabel() (jscatter.graceplot.GraceGraph method)
(jscatter.graceplot.GracePlot method)
ylimit() (jscatter.graceplot.GraceGraph method)
(jscatter.graceplot.GracePlot method)
Z
Z (jscatter.structurefactor.lattices.lattice property)
Zall (jscatter.structurefactor.lattices.lattice property)
zeros() (jscatter.dataarray method)
zilmanGranekBicontinious() (in module jscatter.dynamic.timedomain)
zilmanGranekLamellar() (in module jscatter.dynamic.timedomain)
Table of Contents
1. Beginners Guide / Help
2. dataArray
3. dataList
4. formel
5. smallanglescattering (sas)
6. formfactor (ff)
7. structurefactor (sf)
8. dynamic
9. biomacromolecules (bio)
10. dls
11. Plotting
12. Examples
13. Intention/Extending
14. Installation
15. Citing Jscatter
16. Changelog
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Jscatter 1.6.4
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